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Deprecated functions in inlabru

Source: R/bru.spatial.R, R/deprecated.R, R/environment.R, and 3 more
inlabru-deprecated.Rd

These functions still attempt to do their job, but will be removed in a future version.

Usage

stransform(splist, crs)

init.tutorial()

fm_has_PROJ6()

fm_not_for_PROJ6(fun = NULL)

fm_not_for_PROJ4(fun = NULL)

fm_fallback_PROJ6(fun = NULL)

fm_requires_PROJ6(fun = NULL)

fm_sp_get_crs(x)

fm_spTransform(x, ...)

# S3 method for default
fm_spTransform(x, crs0 = NULL, crs1 = NULL, passthrough = FALSE, ...)

# S3 method for SpatialPoints
fm_spTransform(x, CRSobj, passthrough = FALSE, ...)

# S3 method for SpatialPointsDataFrame
fm_spTransform(x, CRSobj, passthrough = FALSE, ...)

# S3 method for inla.mesh.lattice
fm_spTransform(x, CRSobj, passthrough = FALSE, ...)

# S3 method for inla.mesh.segment
fm_spTransform(x, CRSobj, passthrough = FALSE, ...)

# S3 method for inla.mesh
fm_spTransform(x, CRSobj, passthrough = FALSE, ...)

ibm_valid_input(...)

# S3 method for bru_mapper_inla_mesh_2d
ibm_amatrix(...)

# S3 method for bru_mapper_inla_mesh_1d
ibm_amatrix(...)

# S3 method for bru_mapper_index
ibm_amatrix(...)

# S3 method for bru_mapper_linear
ibm_amatrix(...)

# S3 method for bru_mapper_matrix
ibm_amatrix(...)

# S3 method for bru_mapper_factor
ibm_amatrix(...)

bru_mapper_offset(...)

# S3 method for bru_mapper_offset
ibm_n(...)

# S3 method for bru_mapper_offset
ibm_values(...)

# S3 method for bru_mapper_offset
ibm_amatrix(...)

# S3 method for bru_mapper_multi
ibm_amatrix(...)

# S3 method for bru_mapper_collect
ibm_amatrix(...)

eval_SpatialDF(...)

Arguments

splist

list of Spatial* objects

crs

Coordinate reference system to change to

fun

The name of the function that requires PROJ6. Default: NULL, which uses the name of the calling function.

x

The object that should be transformed from it's current CRS to a new CRS

...

Potential additional arguments

crs0

The source sp::CRS or inla.CRS object

crs1

The target sp::CRS or inla.CRS object

passthrough

Default is FALSE. Setting to TRUE allows objects with no CRS information to be passed through without transformation.

CRSobj

The target sp::CRS or inla.CRS object

Value

stransform

A CRS object, or NULL if no valid CRS identified

Details

This function is a convenience method to workaround PROJ4/PROJ6 differences, and the lack of a crs extraction method for Spatial objects. For newer code, use fm_crs() instead, that returns crs objects, and use fm_as_sp_crs() to convert to old style sp::CRS objects.

Functions

  • stransform(): Coordinate transformation for spatial objects

    This is a wrapper for the spTransform function provided by the sp package. Given a spatial object (or a list thereof) it will transform the coordinate system according to the parameter crs. In addition to the usual spatial objects this function is also capable of transforming INLA::inla.mesh objects that are equipped with a coordinate system. Returns a list of Spatial* objects.

    Deprecated in favour of the fm_transform methods.

  • init.tutorial(): Global setting for tutorial sessions.

    Use bru_options_set() to set specific options instead instead. In versions <= 2.1.15, this function set the INLA integration strategy to "eb" to speed up calculations. This is normally not needed since version 2.2.0, since the only the final iteration will use other than "eb".

  • fm_has_PROJ6(): Detect whether PROJ6 is available

  • fm_not_for_PROJ6(): fm_not_for_PROJ6 is called to warn about using old PROJ4 features even though PROJ6 is available

  • fm_not_for_PROJ4(): fm_not_for_PROJ4 is called to give an error when calling methods that are only available for PROJ6

  • fm_fallback_PROJ6(): Called to warn about falling back to using old PROJ4 methods when a PROJ6 method hasn't been implemented

  • fm_requires_PROJ6(): Called to give an error when PROJ6 is required but not available

  • fm_sp_get_crs(): Wrapper for CRS(projargs) (PROJ4) and CRS(wkt) for sp::Spatial objects.

  • fm_spTransform(): Handle transformation of various inla objects according to coordinate reference systems of sp::CRS or INLA::inla.CRS class.

  • fm_spTransform(default): The default method handles low level transformation of raw coordinates.

  • ibm_valid_input(): Use case changed to ibm_invalid_output()

  • ibm_amatrix(bru_mapper_inla_mesh_2d): Replaced by ibm_jacobian()

  • ibm_amatrix(bru_mapper_inla_mesh_1d): Replaced by ibm_jacobian()

  • ibm_amatrix(bru_mapper_index): Replaced by ibm_jacobian()

  • ibm_amatrix(bru_mapper_linear): Replaced by ibm_jacobian()

  • ibm_amatrix(bru_mapper_matrix): Replaced by ibm_jacobian()

  • ibm_amatrix(bru_mapper_factor): Replaced by ibm_jacobian()

  • bru_mapper_offset(): Creates a bru_mapper_const() mapper.

  • ibm_n(bru_mapper_offset): Replaced by bru_mapper_const methods

  • ibm_values(bru_mapper_offset): Replaced by bru_mapper_const methods

  • ibm_amatrix(bru_mapper_offset): Replaced by bru_mapper_const methods

  • ibm_amatrix(bru_mapper_multi): Replaced by ibm_jacobian()

  • ibm_amatrix(bru_mapper_collect): Replaced by ibm_jacobian()

  • eval_SpatialDF(): Replaced by the generic eval_spatial()

See also

fm_transform()

Author

Finn Lindgren finn.lindgren@gmail.com

Fabian E. Bachl bachlfab@gmail.com

Examples

if (FALSE) {
# Note: Only run this if you want to change the inlabru options for this session

# Determine current bru defaults:
bo <- bru_options_get()

init.tutorial()

# Check if it worked:
bru_options_get("control.inla")
}

if (FALSE) {
if (interactive()) {
  s <- sp::SpatialPoints(matrix(1:6, 3, 2), proj4string = fm_CRS("sphere"))
  fm_sp_get_crs(s)
}
}