Access method for bru_log objects.
Note: Up to version 2.8.0, bru_log() was a deprecated alias for
bru_log_message(). When running on 2.8.0 or earlier, use bru_log_get()
to access the global log, and cat(fit$bru_iinla$log, sep = "\n") to print a
stored estimation object log.
After version 2.8.0, use bru_log() to access the global log, and
bru_log(fit) to access a stored estimation log.
Usage
bru_log(x = NULL, verbosity = NULL)
# S3 method for class 'character'
bru_log(x, verbosity = NULL)
# S3 method for class 'bru_log'
bru_log(x, verbosity = NULL)
# S3 method for class 'iinla'
bru_log(x, verbosity = NULL)
# S3 method for class 'bru'
bru_log(x, verbosity = NULL)
# S3 method for class 'bru_log'
format(x, ..., timestamp = TRUE, verbosity = FALSE)
# S3 method for class 'bru_log'
print(x, ..., timestamp = TRUE, verbosity = FALSE)
# S3 method for class 'bru_log'
as.character(x, ...)
# S3 method for class 'bru_log'
x[i]
# S3 method for class 'bru_log'
c(...)
# S3 method for class 'bru_log'
length(x)Arguments
- x
An object that is, contains, or can be converted to, a
bru_logobject. IfNULL, refers to the globalinlabrulog.- verbosity
integer value for limiting the highest verbosity level being returned.
- ...
further arguments passed to or from other methods.
- timestamp
If
TRUE, include the timestamp of each message. DefaultTRUE.- i
indices specifying elements to extract. If
character, denotes the sequence between bookmarkiand the next bookmark (or the end of the log ifiis the last bookmark)
Value
bru_log A bru_log object, containing a
character vector of log messages, and potentially a vector of bookmarks.
Methods (by generic)
format(bru_log): Format abru_logobject for printing. IfverbosityisTRUE, include the verbosity level of each message.print(bru_log): Print abru_logobject withcat(x, sep = "\n"). IfverbosityisTRUE, include the verbosity level of each message.as.character(bru_log): Convertbru_logobject to a plaincharactervector[: Extract a subset of abru_logobjectc(bru_log): Concatenate severalbru_logorcharacterobjects into abru_logobject.length(bru_log): Obtain the number of log entries into abru_logobject.
Functions
bru_log(): Extract stored log messages. If non-NULL, theverbosityargument determines the maximum verbosity level of the messages to extract.
See also
Other inlabru log methods:
bru_log_bookmark(),
bru_log_message(),
bru_log_new(),
bru_log_offset(),
bru_log_reset()
Examples
bru_log(verbosity = 2L)
#> 2025-04-16 10:38:45.015448: inlabru loaded
#> 2025-04-16 10:38:45.015911: Clear override options
#> 2025-04-16 10:38:49.735891: bru: Preprocessing
#> 2025-04-16 10:38:49.98612: iinla: Iteration 1 [max:1]
#> 2025-04-16 10:38:50.595817: bru: Preprocessing
#> 2025-04-16 10:38:50.756539: iinla: Iteration 1 [max:10]
#> 2025-04-16 10:38:51.223174: iinla: Iteration 2 [max:10]
#> 2025-04-16 10:38:51.942456: iinla: Max deviation from previous: 0.222% of SD, and line search is inactive
#> [stop if: <10% and line search inactive]
#> 2025-04-16 10:38:51.943621: iinla: Convergence criterion met.
#> Running final INLA integration step with known theta mode.
#> 2025-04-16 10:38:51.945317: iinla: Iteration 3 [max:10]
#> 2025-04-16 10:38:52.399964: bru: Preprocessing
#> 2025-04-16 10:38:52.54295: iinla: Iteration 1 [max:10]
#> 2025-04-16 10:38:52.946549: iinla: Step rescaling: 27.5% (norm0 = 271.5, norm1 = 330.5, norm01 = 510.5)
#> 2025-04-16 10:38:52.987652: iinla: Iteration 2 [max:10]
#> 2025-04-16 10:38:53.404107: iinla: Step rescaling: 99.7% (norm0 = 329.6, norm1 = 15.13, norm01 = 330.6)
#> 2025-04-16 10:38:53.44434: iinla: Max deviation from previous: 68000% of SD, and line search is active
#> [stop if: <10% and line search inactive]
#> 2025-04-16 10:38:53.446118: iinla: Iteration 3 [max:10]
#> 2025-04-16 10:38:53.858206: iinla: Step rescaling: 102% (norm0 = 15.13, norm1 = 0.01452, norm01 = 15.13)
#> 2025-04-16 10:38:53.89852: iinla: Max deviation from previous: 701% of SD, and line search is active
#> [stop if: <10% and line search inactive]
#> 2025-04-16 10:38:53.900317: iinla: Iteration 4 [max:10]
#> 2025-04-16 10:38:54.352611: iinla: Max deviation from previous: 11.1% of SD, and line search is inactive
#> [stop if: <10% and line search inactive]
#> 2025-04-16 10:38:54.354369: iinla: Iteration 5 [max:10]
#> 2025-04-16 10:38:54.80689: iinla: Max deviation from previous: 0.111% of SD, and line search is inactive
#> [stop if: <10% and line search inactive]
#> 2025-04-16 10:38:54.808088: iinla: Convergence criterion met.
#> Running final INLA integration step with known theta mode.
#> 2025-04-16 10:38:54.809748: iinla: Iteration 6 [max:10]
#> 2025-04-16 10:38:58.604499: bru: Preprocessing
#> 2025-04-16 10:38:58.748424: iinla: Iteration 1 [max:1]
format(bru_log())
#> [1] "2025-04-16 10:38:45.015448: inlabru loaded"
#> [2] "2025-04-16 10:38:45.015911: Clear override options"
#> [3] "2025-04-16 10:38:49.735891: bru: Preprocessing"
#> [4] "2025-04-16 10:38:49.742385: Evaluate component inputs for each observation model"
#> [5] "2025-04-16 10:38:49.743667: input_eval.component_list"
#> [6] "2025-04-16 10:38:49.744967: input_eval.component(x)"
#> [7] "2025-04-16 10:38:49.746447: input_eval.bru_input(x)"
#> [8] "2025-04-16 10:38:49.753577: input_eval.bru_input(x.group)"
#> [9] "2025-04-16 10:38:49.758447: input_eval.bru_input(x.repl)"
#> [10] "2025-04-16 10:38:49.763222: input_eval.component(Intercept)"
#> [11] "2025-04-16 10:38:49.76442: input_eval.bru_input(Intercept)"
#> [12] "2025-04-16 10:38:49.769175: input_eval.bru_input(Intercept.group)"
#> [13] "2025-04-16 10:38:49.773942: input_eval.bru_input(Intercept.repl)"
#> [14] "2025-04-16 10:38:49.895319: iinla: Start"
#> [15] "2025-04-16 10:38:49.896573: iinla: Evaluate component linearisations"
#> [16] "2025-04-16 10:38:49.897866: Linearise components for each observation model"
#> [17] "2025-04-16 10:38:49.899201: Linearise components"
#> [18] "2025-04-16 10:38:49.900439: Linearise component 'x'"
#> [19] "2025-04-16 10:38:49.920263: Linearise component 'Intercept'"
#> [20] "2025-04-16 10:38:49.929377: iinla: Evaluate component simplifications"
#> [21] "2025-04-16 10:38:49.930666: Simplify model components"
#> [22] "2025-04-16 10:38:49.932028: Simplify component 'x'"
#> [23] "2025-04-16 10:38:49.941604: Simplify component 'Intercept'"
#> [24] "2025-04-16 10:38:49.950426: iinla: Evaluate predictor linearisation"
#> [25] "2025-04-16 10:38:49.96275: iinla: Construct inla stack"
#> [26] "2025-04-16 10:38:49.98489: iinla: Model initialisation completed"
#> [27] "2025-04-16 10:38:49.98612: iinla: Iteration 1 [max:1]"
#> [28] "2025-04-16 10:38:50.595817: bru: Preprocessing"
#> [29] "2025-04-16 10:38:50.598414: Evaluate component inputs for each observation model"
#> [30] "2025-04-16 10:38:50.599711: input_eval.component_list"
#> [31] "2025-04-16 10:38:50.60093: input_eval.component(x)"
#> [32] "2025-04-16 10:38:50.602121: input_eval.bru_input(x)"
#> [33] "2025-04-16 10:38:50.608964: input_eval.bru_input(x.group)"
#> [34] "2025-04-16 10:38:50.614278: input_eval.bru_input(x.repl)"
#> [35] "2025-04-16 10:38:50.619305: input_eval.component(Intercept)"
#> [36] "2025-04-16 10:38:50.620492: input_eval.bru_input(Intercept)"
#> [37] "2025-04-16 10:38:50.625482: input_eval.bru_input(Intercept.group)"
#> [38] "2025-04-16 10:38:50.630422: input_eval.bru_input(Intercept.repl)"
#> [39] "2025-04-16 10:38:50.684437: iinla: Start"
#> [40] "2025-04-16 10:38:50.685663: iinla: Evaluate component linearisations"
#> [41] "2025-04-16 10:38:50.686834: Linearise components for each observation model"
#> [42] "2025-04-16 10:38:50.688122: Linearise components"
#> [43] "2025-04-16 10:38:50.689324: Linearise component 'x'"
#> [44] "2025-04-16 10:38:50.699938: Linearise component 'Intercept'"
#> [45] "2025-04-16 10:38:50.708844: iinla: Evaluate component simplifications"
#> [46] "2025-04-16 10:38:50.71011: Simplify model components"
#> [47] "2025-04-16 10:38:50.711418: Simplify component 'x'"
#> [48] "2025-04-16 10:38:50.720976: Simplify component 'Intercept'"
#> [49] "2025-04-16 10:38:50.730058: iinla: Evaluate predictor linearisation"
#> [50] "2025-04-16 10:38:50.732556: Linearise with respect to component 'x'"
#> [51] "2025-04-16 10:38:50.738884: Linearise with respect to component 'Intercept'"
#> [52] "2025-04-16 10:38:50.742343: iinla: Construct inla stack"
#> [53] "2025-04-16 10:38:50.755277: iinla: Model initialisation completed"
#> [54] "2025-04-16 10:38:50.756539: iinla: Iteration 1 [max:10]"
#> [55] "2025-04-16 10:38:51.160991: iinla: Step rescaling: 100%, Approx Optimisation (norm0 = 343.2, norm1 = 0, norm01 = 343.2)"
#> [56] "2025-04-16 10:38:51.162265: iinla: Optimisation did not improve on previous solution."
#> [57] "2025-04-16 10:38:51.163493: iinla: |lin1-lin0| = 343.2\n <eta-lin1,delta>/|delta| = 0\n |eta-lin0 - delta <delta,eta-lin0>/<delta,delta>| = 3.109e-14"
#> [58] "2025-04-16 10:38:51.165251: iinla: Evaluate component linearisations"
#> [59] "2025-04-16 10:38:51.166462: Linearise components for each observation model"
#> [60] "2025-04-16 10:38:51.167706: Linearise components"
#> [61] "2025-04-16 10:38:51.168895: Linearise component 'x'"
#> [62] "2025-04-16 10:38:51.178567: Linearise component 'Intercept'"
#> [63] "2025-04-16 10:38:51.18753: iinla: Evaluate predictor linearisation"
#> [64] "2025-04-16 10:38:51.189519: Linearise with respect to component 'x'"
#> [65] "2025-04-16 10:38:51.192762: Linearise with respect to component 'Intercept'"
#> [66] "2025-04-16 10:38:51.223174: iinla: Iteration 2 [max:10]"
#> [67] "2025-04-16 10:38:51.894334: iinla: Step rescaling: 162%, Expand (norm0 = 7.367e-07, norm1 = 2.814e-07, norm01 = 4.553e-07)"
#> [68] "2025-04-16 10:38:51.896428: iinla: Step rescaling: 100%, Overstep (norm0 = 4.553e-07, norm1 = 3.78e-14, norm01 = 4.553e-07)"
#> [69] "2025-04-16 10:38:51.899111: iinla: Step rescaling: 100%, Approx Optimisation (norm0 = 4.553e-07, norm1 = 3.78e-14, norm01 = 4.553e-07)"
#> [70] "2025-04-16 10:38:51.900294: iinla: Optimisation did not improve on previous solution."
#> [71] "2025-04-16 10:38:51.901458: iinla: |lin1-lin0| = 4.553e-07\n <eta-lin1,delta>/|delta| = -4.086e-15\n |eta-lin0 - delta <delta,eta-lin0>/<delta,delta>| = 3.758e-14"
#> [72] "2025-04-16 10:38:51.903119: iinla: Evaluate component linearisations"
#> [73] "2025-04-16 10:38:51.90423: Linearise components for each observation model"
#> [74] "2025-04-16 10:38:51.9054: Linearise components"
#> [75] "2025-04-16 10:38:51.906519: Linearise component 'x'"
#> [76] "2025-04-16 10:38:51.916125: Linearise component 'Intercept'"
#> [77] "2025-04-16 10:38:51.925085: iinla: Evaluate predictor linearisation"
#> [78] "2025-04-16 10:38:51.927003: Linearise with respect to component 'x'"
#> [79] "2025-04-16 10:38:51.930076: Linearise with respect to component 'Intercept'"
#> [80] "2025-04-16 10:38:51.942456: iinla: Max deviation from previous: 0.222% of SD, and line search is inactive\n [stop if: <10% and line search inactive]"
#> [81] "2025-04-16 10:38:51.943621: iinla: Convergence criterion met.\n Running final INLA integration step with known theta mode."
#> [82] "2025-04-16 10:38:51.945317: iinla: Iteration 3 [max:10]"
#> [83] "2025-04-16 10:38:52.399964: bru: Preprocessing"
#> [84] "2025-04-16 10:38:52.402329: Evaluate component inputs for each observation model"
#> [85] "2025-04-16 10:38:52.403517: input_eval.component_list"
#> [86] "2025-04-16 10:38:52.404751: input_eval.component(z)"
#> [87] "2025-04-16 10:38:52.405997: input_eval.bru_input(z)"
#> [88] "2025-04-16 10:38:52.412205: input_eval.bru_input(z.group)"
#> [89] "2025-04-16 10:38:52.417096: input_eval.bru_input(z.repl)"
#> [90] "2025-04-16 10:38:52.421984: input_eval.component(Intercept)"
#> [91] "2025-04-16 10:38:52.423221: input_eval.bru_input(Intercept)"
#> [92] "2025-04-16 10:38:52.428108: input_eval.bru_input(Intercept.group)"
#> [93] "2025-04-16 10:38:52.432883: input_eval.bru_input(Intercept.repl)"
#> [94] "2025-04-16 10:38:52.478563: iinla: Start"
#> [95] "2025-04-16 10:38:52.479779: iinla: Evaluate component linearisations"
#> [96] "2025-04-16 10:38:52.480968: Linearise components for each observation model"
#> [97] "2025-04-16 10:38:52.482187: Linearise components"
#> [98] "2025-04-16 10:38:52.483338: Linearise component 'z'"
#> [99] "2025-04-16 10:38:52.492424: Linearise component 'Intercept'"
#> [100] "2025-04-16 10:38:52.501128: iinla: Evaluate component simplifications"
#> [101] "2025-04-16 10:38:52.502295: Simplify model components"
#> [102] "2025-04-16 10:38:52.503507: Simplify component 'z'"
#> [103] "2025-04-16 10:38:52.512267: Simplify component 'Intercept'"
#> [104] "2025-04-16 10:38:52.521015: iinla: Evaluate predictor linearisation"
#> [105] "2025-04-16 10:38:52.523025: Linearise with respect to component 'z'"
#> [106] "2025-04-16 10:38:52.52636: Linearise with respect to component 'Intercept'"
#> [107] "2025-04-16 10:38:52.529465: iinla: Construct inla stack"
#> [108] "2025-04-16 10:38:52.541749: iinla: Model initialisation completed"
#> [109] "2025-04-16 10:38:52.54295: iinla: Iteration 1 [max:10]"
#> [110] "2025-04-16 10:38:52.939187: iinla: Step rescaling: 61.8%, Contract (norm0 = 2849, norm1 = 2611, norm01 = 510.5)"
#> [111] "2025-04-16 10:38:52.941236: iinla: Step rescaling: 38.2%, Contract (norm0 = 580.8, norm1 = 429.5, norm01 = 510.5)"
#> [112] "2025-04-16 10:38:52.943795: iinla: Step rescaling: 27.53%, Approx Optimisation (norm0 = 271.5, norm1 = 330.5, norm01 = 510.5)"
#> [113] "2025-04-16 10:38:52.945036: iinla: |lin1-lin0| = 510.5\n <eta-lin1,delta>/|delta| = -290.1\n |eta-lin0 - delta <delta,eta-lin0>/<delta,delta>| = 158.5"
#> [114] "2025-04-16 10:38:52.946549: iinla: Step rescaling: 27.5% (norm0 = 271.5, norm1 = 330.5, norm01 = 510.5)"
#> [115] "2025-04-16 10:38:52.948248: iinla: Evaluate component linearisations"
#> [116] "2025-04-16 10:38:52.949389: Linearise components for each observation model"
#> [117] "2025-04-16 10:38:52.950596: Linearise components"
#> [118] "2025-04-16 10:38:52.951754: Linearise component 'z'"
#> [119] "2025-04-16 10:38:52.960736: Linearise component 'Intercept'"
#> [120] "2025-04-16 10:38:52.969585: iinla: Evaluate predictor linearisation"
#> [121] "2025-04-16 10:38:52.971527: Linearise with respect to component 'z'"
#> [122] "2025-04-16 10:38:52.974821: Linearise with respect to component 'Intercept'"
#> [123] "2025-04-16 10:38:52.987652: iinla: Iteration 2 [max:10]"
#> [124] "2025-04-16 10:38:53.3971: iinla: Step rescaling: 162%, Expand (norm0 = 535.2, norm1 = 207.3, norm01 = 330.6)"
#> [125] "2025-04-16 10:38:53.399162: iinla: Step rescaling: 100%, Overstep (norm0 = 330.5, norm1 = 15.16, norm01 = 330.6)"
#> [126] "2025-04-16 10:38:53.401712: iinla: Step rescaling: 99.73%, Approx Optimisation (norm0 = 329.6, norm1 = 15.13, norm01 = 330.6)"
#> [127] "2025-04-16 10:38:53.402946: iinla: |lin1-lin0| = 330.6\n <eta-lin1,delta>/|delta| = -1.388\n |eta-lin0 - delta <delta,eta-lin0>/<delta,delta>| = 15.07"
#> [128] "2025-04-16 10:38:53.404107: iinla: Step rescaling: 99.7% (norm0 = 329.6, norm1 = 15.13, norm01 = 330.6)"
#> [129] "2025-04-16 10:38:53.405721: iinla: Evaluate component linearisations"
#> [130] "2025-04-16 10:38:53.406968: Linearise components for each observation model"
#> [131] "2025-04-16 10:38:53.408181: Linearise components"
#> [132] "2025-04-16 10:38:53.40932: Linearise component 'z'"
#> [133] "2025-04-16 10:38:53.418111: Linearise component 'Intercept'"
#> [134] "2025-04-16 10:38:53.426776: iinla: Evaluate predictor linearisation"
#> [135] "2025-04-16 10:38:53.428677: Linearise with respect to component 'z'"
#> [136] "2025-04-16 10:38:53.431978: Linearise with respect to component 'Intercept'"
#> [137] "2025-04-16 10:38:53.44434: iinla: Max deviation from previous: 68000% of SD, and line search is active\n [stop if: <10% and line search inactive]"
#> [138] "2025-04-16 10:38:53.446118: iinla: Iteration 3 [max:10]"
#> [139] "2025-04-16 10:38:53.85128: iinla: Step rescaling: 162%, Expand (norm0 = 23.85, norm1 = 8.728, norm01 = 15.13)"
#> [140] "2025-04-16 10:38:53.85326: iinla: Step rescaling: 100%, Overstep (norm0 = 14.89, norm1 = 0.2394, norm01 = 15.13)"
#> [141] "2025-04-16 10:38:53.855798: iinla: Step rescaling: 101.6%, Approx Optimisation (norm0 = 15.13, norm1 = 0.01452, norm01 = 15.13)"
#> [142] "2025-04-16 10:38:53.857031: iinla: |lin1-lin0| = 15.13\n <eta-lin1,delta>/|delta| = -1.014e-05\n |eta-lin0 - delta <delta,eta-lin0>/<delta,delta>| = 0.01452"
#> [143] "2025-04-16 10:38:53.858206: iinla: Step rescaling: 102% (norm0 = 15.13, norm1 = 0.01452, norm01 = 15.13)"
#> [144] "2025-04-16 10:38:53.859854: iinla: Evaluate component linearisations"
#> [145] "2025-04-16 10:38:53.861001: Linearise components for each observation model"
#> [146] "2025-04-16 10:38:53.862189: Linearise components"
#> [147] "2025-04-16 10:38:53.863343: Linearise component 'z'"
#> [148] "2025-04-16 10:38:53.872234: Linearise component 'Intercept'"
#> [149] "2025-04-16 10:38:53.880994: iinla: Evaluate predictor linearisation"
#> [150] "2025-04-16 10:38:53.88299: Linearise with respect to component 'z'"
#> [151] "2025-04-16 10:38:53.886265: Linearise with respect to component 'Intercept'"
#> [152] "2025-04-16 10:38:53.89852: iinla: Max deviation from previous: 701% of SD, and line search is active\n [stop if: <10% and line search inactive]"
#> [153] "2025-04-16 10:38:53.900317: iinla: Iteration 4 [max:10]"
#> [154] "2025-04-16 10:38:54.306432: iinla: Step rescaling: 162%, Expand (norm0 = 0.02349, norm1 = 0.008971, norm01 = 0.01452)"
#> [155] "2025-04-16 10:38:54.30849: iinla: Step rescaling: 100%, Overstep (norm0 = 0.01452, norm1 = 6.369e-08, norm01 = 0.01452)"
#> [156] "2025-04-16 10:38:54.311071: iinla: Step rescaling: 100%, Approx Optimisation (norm0 = 0.01452, norm1 = 6.357e-08, norm01 = 0.01452)"
#> [157] "2025-04-16 10:38:54.312293: iinla: |lin1-lin0| = 0.01452\n <eta-lin1,delta>/|delta| = 8.003e-11\n |eta-lin0 - delta <delta,eta-lin0>/<delta,delta>| = 6.357e-08"
#> [158] "2025-04-16 10:38:54.313965: iinla: Evaluate component linearisations"
#> [159] "2025-04-16 10:38:54.315106: Linearise components for each observation model"
#> [160] "2025-04-16 10:38:54.316301: Linearise components"
#> [161] "2025-04-16 10:38:54.317432: Linearise component 'z'"
#> [162] "2025-04-16 10:38:54.326344: Linearise component 'Intercept'"
#> [163] "2025-04-16 10:38:54.334907: iinla: Evaluate predictor linearisation"
#> [164] "2025-04-16 10:38:54.336829: Linearise with respect to component 'z'"
#> [165] "2025-04-16 10:38:54.340162: Linearise with respect to component 'Intercept'"
#> [166] "2025-04-16 10:38:54.352611: iinla: Max deviation from previous: 11.1% of SD, and line search is inactive\n [stop if: <10% and line search inactive]"
#> [167] "2025-04-16 10:38:54.354369: iinla: Iteration 5 [max:10]"
#> [168] "2025-04-16 10:38:54.760314: iinla: Step rescaling: 162%, Expand (norm0 = 2.528e-07, norm1 = 9.654e-08, norm01 = 1.562e-07)"
#> [169] "2025-04-16 10:38:54.762364: iinla: Step rescaling: 100%, Overstep (norm0 = 1.562e-07, norm1 = 4.855e-13, norm01 = 1.562e-07)"
#> [170] "2025-04-16 10:38:54.764953: iinla: Step rescaling: 100%, Approx Optimisation (norm0 = 1.562e-07, norm1 = 4.442e-13, norm01 = 1.562e-07)"
#> [171] "2025-04-16 10:38:54.76618: iinla: |lin1-lin0| = 1.562e-07\n <eta-lin1,delta>/|delta| = -4.26e-15\n |eta-lin0 - delta <delta,eta-lin0>/<delta,delta>| = 4.442e-13"
#> [172] "2025-04-16 10:38:54.767817: iinla: Evaluate component linearisations"
#> [173] "2025-04-16 10:38:54.768972: Linearise components for each observation model"
#> [174] "2025-04-16 10:38:54.770162: Linearise components"
#> [175] "2025-04-16 10:38:54.771305: Linearise component 'z'"
#> [176] "2025-04-16 10:38:54.780147: Linearise component 'Intercept'"
#> [177] "2025-04-16 10:38:54.789389: iinla: Evaluate predictor linearisation"
#> [178] "2025-04-16 10:38:54.791341: Linearise with respect to component 'z'"
#> [179] "2025-04-16 10:38:54.794606: Linearise with respect to component 'Intercept'"
#> [180] "2025-04-16 10:38:54.80689: iinla: Max deviation from previous: 0.111% of SD, and line search is inactive\n [stop if: <10% and line search inactive]"
#> [181] "2025-04-16 10:38:54.808088: iinla: Convergence criterion met.\n Running final INLA integration step with known theta mode."
#> [182] "2025-04-16 10:38:54.809748: iinla: Iteration 6 [max:10]"
#> [183] "2025-04-16 10:38:58.604499: bru: Preprocessing"
#> [184] "2025-04-16 10:38:58.609716: Evaluate component inputs for each observation model"
#> [185] "2025-04-16 10:38:58.610999: input_eval.component_list"
#> [186] "2025-04-16 10:38:58.612194: input_eval.component(x)"
#> [187] "2025-04-16 10:38:58.613394: input_eval.bru_input(x)"
#> [188] "2025-04-16 10:38:58.621123: input_eval.bru_input(x.group)"
#> [189] "2025-04-16 10:38:58.626938: input_eval.bru_input(x.repl)"
#> [190] "2025-04-16 10:38:58.632083: input_eval.component_list"
#> [191] "2025-04-16 10:38:58.633281: input_eval.component(x)"
#> [192] "2025-04-16 10:38:58.634478: input_eval.bru_input(x)"
#> [193] "2025-04-16 10:38:58.639622: input_eval.bru_input(x.group)"
#> [194] "2025-04-16 10:38:58.644746: input_eval.bru_input(x.repl)"
#> [195] "2025-04-16 10:38:58.671632: iinla: Start"
#> [196] "2025-04-16 10:38:58.672815: iinla: Evaluate component linearisations"
#> [197] "2025-04-16 10:38:58.674096: Linearise components for each observation model"
#> [198] "2025-04-16 10:38:58.675332: Linearise components"
#> [199] "2025-04-16 10:38:58.6765: Linearise component 'x'"
#> [200] "2025-04-16 10:38:58.687773: Linearise components"
#> [201] "2025-04-16 10:38:58.689018: Linearise component 'x'"
#> [202] "2025-04-16 10:38:58.698428: iinla: Evaluate component simplifications"
#> [203] "2025-04-16 10:38:58.699651: Simplify model components"
#> [204] "2025-04-16 10:38:58.700935: Simplify component 'x'"
#> [205] "2025-04-16 10:38:58.715503: Simplify component 'x'"
#> [206] "2025-04-16 10:38:58.724684: iinla: Evaluate predictor linearisation"
#> [207] "2025-04-16 10:38:58.731125: iinla: Construct inla stack"
#> [208] "2025-04-16 10:38:58.747064: iinla: Model initialisation completed"
#> [209] "2025-04-16 10:38:58.748424: iinla: Iteration 1 [max:1]"
bru_log(verbosity = 2L)
#> 2025-04-16 10:38:45.015448: inlabru loaded
#> 2025-04-16 10:38:45.015911: Clear override options
#> 2025-04-16 10:38:49.735891: bru: Preprocessing
#> 2025-04-16 10:38:49.98612: iinla: Iteration 1 [max:1]
#> 2025-04-16 10:38:50.595817: bru: Preprocessing
#> 2025-04-16 10:38:50.756539: iinla: Iteration 1 [max:10]
#> 2025-04-16 10:38:51.223174: iinla: Iteration 2 [max:10]
#> 2025-04-16 10:38:51.942456: iinla: Max deviation from previous: 0.222% of SD, and line search is inactive
#> [stop if: <10% and line search inactive]
#> 2025-04-16 10:38:51.943621: iinla: Convergence criterion met.
#> Running final INLA integration step with known theta mode.
#> 2025-04-16 10:38:51.945317: iinla: Iteration 3 [max:10]
#> 2025-04-16 10:38:52.399964: bru: Preprocessing
#> 2025-04-16 10:38:52.54295: iinla: Iteration 1 [max:10]
#> 2025-04-16 10:38:52.946549: iinla: Step rescaling: 27.5% (norm0 = 271.5, norm1 = 330.5, norm01 = 510.5)
#> 2025-04-16 10:38:52.987652: iinla: Iteration 2 [max:10]
#> 2025-04-16 10:38:53.404107: iinla: Step rescaling: 99.7% (norm0 = 329.6, norm1 = 15.13, norm01 = 330.6)
#> 2025-04-16 10:38:53.44434: iinla: Max deviation from previous: 68000% of SD, and line search is active
#> [stop if: <10% and line search inactive]
#> 2025-04-16 10:38:53.446118: iinla: Iteration 3 [max:10]
#> 2025-04-16 10:38:53.858206: iinla: Step rescaling: 102% (norm0 = 15.13, norm1 = 0.01452, norm01 = 15.13)
#> 2025-04-16 10:38:53.89852: iinla: Max deviation from previous: 701% of SD, and line search is active
#> [stop if: <10% and line search inactive]
#> 2025-04-16 10:38:53.900317: iinla: Iteration 4 [max:10]
#> 2025-04-16 10:38:54.352611: iinla: Max deviation from previous: 11.1% of SD, and line search is inactive
#> [stop if: <10% and line search inactive]
#> 2025-04-16 10:38:54.354369: iinla: Iteration 5 [max:10]
#> 2025-04-16 10:38:54.80689: iinla: Max deviation from previous: 0.111% of SD, and line search is inactive
#> [stop if: <10% and line search inactive]
#> 2025-04-16 10:38:54.808088: iinla: Convergence criterion met.
#> Running final INLA integration step with known theta mode.
#> 2025-04-16 10:38:54.809748: iinla: Iteration 6 [max:10]
#> 2025-04-16 10:38:58.604499: bru: Preprocessing
#> 2025-04-16 10:38:58.748424: iinla: Iteration 1 [max:1]
print(bru_log(), timestamp = TRUE, verbosity = TRUE)
#> 2025-04-16 10:38:45.015448: inlabru loaded (level 1)
#> 2025-04-16 10:38:45.015911: Clear override options (level 1)
#> 2025-04-16 10:38:49.735891: bru: Preprocessing (level 1)
#> 2025-04-16 10:38:49.742385: Evaluate component inputs for each observation model (level 3)
#> 2025-04-16 10:38:49.743667: input_eval.component_list (level 4)
#> 2025-04-16 10:38:49.744967: input_eval.component(x) (level 4)
#> 2025-04-16 10:38:49.746447: input_eval.bru_input(x) (level 5)
#> 2025-04-16 10:38:49.753577: input_eval.bru_input(x.group) (level 5)
#> 2025-04-16 10:38:49.758447: input_eval.bru_input(x.repl) (level 5)
#> 2025-04-16 10:38:49.763222: input_eval.component(Intercept) (level 4)
#> 2025-04-16 10:38:49.76442: input_eval.bru_input(Intercept) (level 5)
#> 2025-04-16 10:38:49.769175: input_eval.bru_input(Intercept.group) (level 5)
#> 2025-04-16 10:38:49.773942: input_eval.bru_input(Intercept.repl) (level 5)
#> 2025-04-16 10:38:49.895319: iinla: Start (level 3)
#> 2025-04-16 10:38:49.896573: iinla: Evaluate component linearisations (level 3)
#> 2025-04-16 10:38:49.897866: Linearise components for each observation model (level 3)
#> 2025-04-16 10:38:49.899201: Linearise components (level 3)
#> 2025-04-16 10:38:49.900439: Linearise component 'x' (level 4)
#> 2025-04-16 10:38:49.920263: Linearise component 'Intercept' (level 4)
#> 2025-04-16 10:38:49.929377: iinla: Evaluate component simplifications (level 3)
#> 2025-04-16 10:38:49.930666: Simplify model components (level 3)
#> 2025-04-16 10:38:49.932028: Simplify component 'x' (level 4)
#> 2025-04-16 10:38:49.941604: Simplify component 'Intercept' (level 4)
#> 2025-04-16 10:38:49.950426: iinla: Evaluate predictor linearisation (level 3)
#> 2025-04-16 10:38:49.96275: iinla: Construct inla stack (level 3)
#> 2025-04-16 10:38:49.98489: iinla: Model initialisation completed (level 3)
#> 2025-04-16 10:38:49.98612: iinla: Iteration 1 [max:1] (level 1)
#> 2025-04-16 10:38:50.595817: bru: Preprocessing (level 1)
#> 2025-04-16 10:38:50.598414: Evaluate component inputs for each observation model (level 3)
#> 2025-04-16 10:38:50.599711: input_eval.component_list (level 4)
#> 2025-04-16 10:38:50.60093: input_eval.component(x) (level 4)
#> 2025-04-16 10:38:50.602121: input_eval.bru_input(x) (level 5)
#> 2025-04-16 10:38:50.608964: input_eval.bru_input(x.group) (level 5)
#> 2025-04-16 10:38:50.614278: input_eval.bru_input(x.repl) (level 5)
#> 2025-04-16 10:38:50.619305: input_eval.component(Intercept) (level 4)
#> 2025-04-16 10:38:50.620492: input_eval.bru_input(Intercept) (level 5)
#> 2025-04-16 10:38:50.625482: input_eval.bru_input(Intercept.group) (level 5)
#> 2025-04-16 10:38:50.630422: input_eval.bru_input(Intercept.repl) (level 5)
#> 2025-04-16 10:38:50.684437: iinla: Start (level 3)
#> 2025-04-16 10:38:50.685663: iinla: Evaluate component linearisations (level 3)
#> 2025-04-16 10:38:50.686834: Linearise components for each observation model (level 3)
#> 2025-04-16 10:38:50.688122: Linearise components (level 3)
#> 2025-04-16 10:38:50.689324: Linearise component 'x' (level 4)
#> 2025-04-16 10:38:50.699938: Linearise component 'Intercept' (level 4)
#> 2025-04-16 10:38:50.708844: iinla: Evaluate component simplifications (level 3)
#> 2025-04-16 10:38:50.71011: Simplify model components (level 3)
#> 2025-04-16 10:38:50.711418: Simplify component 'x' (level 4)
#> 2025-04-16 10:38:50.720976: Simplify component 'Intercept' (level 4)
#> 2025-04-16 10:38:50.730058: iinla: Evaluate predictor linearisation (level 3)
#> 2025-04-16 10:38:50.732556: Linearise with respect to component 'x' (level 4)
#> 2025-04-16 10:38:50.738884: Linearise with respect to component 'Intercept' (level 4)
#> 2025-04-16 10:38:50.742343: iinla: Construct inla stack (level 3)
#> 2025-04-16 10:38:50.755277: iinla: Model initialisation completed (level 3)
#> 2025-04-16 10:38:50.756539: iinla: Iteration 1 [max:10] (level 1)
#> 2025-04-16 10:38:51.160991: iinla: Step rescaling: 100%, Approx Optimisation (norm0 = 343.2, norm1 = 0, norm01 = 343.2) (level 3)
#> 2025-04-16 10:38:51.162265: iinla: Optimisation did not improve on previous solution. (level 3)
#> 2025-04-16 10:38:51.163493: iinla: |lin1-lin0| = 343.2
#> <eta-lin1,delta>/|delta| = 0
#> |eta-lin0 - delta <delta,eta-lin0>/<delta,delta>| = 3.109e-14 (level 4)
#> 2025-04-16 10:38:51.165251: iinla: Evaluate component linearisations (level 3)
#> 2025-04-16 10:38:51.166462: Linearise components for each observation model (level 3)
#> 2025-04-16 10:38:51.167706: Linearise components (level 3)
#> 2025-04-16 10:38:51.168895: Linearise component 'x' (level 4)
#> 2025-04-16 10:38:51.178567: Linearise component 'Intercept' (level 4)
#> 2025-04-16 10:38:51.18753: iinla: Evaluate predictor linearisation (level 3)
#> 2025-04-16 10:38:51.189519: Linearise with respect to component 'x' (level 4)
#> 2025-04-16 10:38:51.192762: Linearise with respect to component 'Intercept' (level 4)
#> 2025-04-16 10:38:51.223174: iinla: Iteration 2 [max:10] (level 1)
#> 2025-04-16 10:38:51.894334: iinla: Step rescaling: 162%, Expand (norm0 = 7.367e-07, norm1 = 2.814e-07, norm01 = 4.553e-07) (level 3)
#> 2025-04-16 10:38:51.896428: iinla: Step rescaling: 100%, Overstep (norm0 = 4.553e-07, norm1 = 3.78e-14, norm01 = 4.553e-07) (level 3)
#> 2025-04-16 10:38:51.899111: iinla: Step rescaling: 100%, Approx Optimisation (norm0 = 4.553e-07, norm1 = 3.78e-14, norm01 = 4.553e-07) (level 3)
#> 2025-04-16 10:38:51.900294: iinla: Optimisation did not improve on previous solution. (level 3)
#> 2025-04-16 10:38:51.901458: iinla: |lin1-lin0| = 4.553e-07
#> <eta-lin1,delta>/|delta| = -4.086e-15
#> |eta-lin0 - delta <delta,eta-lin0>/<delta,delta>| = 3.758e-14 (level 4)
#> 2025-04-16 10:38:51.903119: iinla: Evaluate component linearisations (level 3)
#> 2025-04-16 10:38:51.90423: Linearise components for each observation model (level 3)
#> 2025-04-16 10:38:51.9054: Linearise components (level 3)
#> 2025-04-16 10:38:51.906519: Linearise component 'x' (level 4)
#> 2025-04-16 10:38:51.916125: Linearise component 'Intercept' (level 4)
#> 2025-04-16 10:38:51.925085: iinla: Evaluate predictor linearisation (level 3)
#> 2025-04-16 10:38:51.927003: Linearise with respect to component 'x' (level 4)
#> 2025-04-16 10:38:51.930076: Linearise with respect to component 'Intercept' (level 4)
#> 2025-04-16 10:38:51.942456: iinla: Max deviation from previous: 0.222% of SD, and line search is inactive
#> [stop if: <10% and line search inactive] (level 1)
#> 2025-04-16 10:38:51.943621: iinla: Convergence criterion met.
#> Running final INLA integration step with known theta mode. (level 1)
#> 2025-04-16 10:38:51.945317: iinla: Iteration 3 [max:10] (level 1)
#> 2025-04-16 10:38:52.399964: bru: Preprocessing (level 1)
#> 2025-04-16 10:38:52.402329: Evaluate component inputs for each observation model (level 3)
#> 2025-04-16 10:38:52.403517: input_eval.component_list (level 4)
#> 2025-04-16 10:38:52.404751: input_eval.component(z) (level 4)
#> 2025-04-16 10:38:52.405997: input_eval.bru_input(z) (level 5)
#> 2025-04-16 10:38:52.412205: input_eval.bru_input(z.group) (level 5)
#> 2025-04-16 10:38:52.417096: input_eval.bru_input(z.repl) (level 5)
#> 2025-04-16 10:38:52.421984: input_eval.component(Intercept) (level 4)
#> 2025-04-16 10:38:52.423221: input_eval.bru_input(Intercept) (level 5)
#> 2025-04-16 10:38:52.428108: input_eval.bru_input(Intercept.group) (level 5)
#> 2025-04-16 10:38:52.432883: input_eval.bru_input(Intercept.repl) (level 5)
#> 2025-04-16 10:38:52.478563: iinla: Start (level 3)
#> 2025-04-16 10:38:52.479779: iinla: Evaluate component linearisations (level 3)
#> 2025-04-16 10:38:52.480968: Linearise components for each observation model (level 3)
#> 2025-04-16 10:38:52.482187: Linearise components (level 3)
#> 2025-04-16 10:38:52.483338: Linearise component 'z' (level 4)
#> 2025-04-16 10:38:52.492424: Linearise component 'Intercept' (level 4)
#> 2025-04-16 10:38:52.501128: iinla: Evaluate component simplifications (level 3)
#> 2025-04-16 10:38:52.502295: Simplify model components (level 3)
#> 2025-04-16 10:38:52.503507: Simplify component 'z' (level 4)
#> 2025-04-16 10:38:52.512267: Simplify component 'Intercept' (level 4)
#> 2025-04-16 10:38:52.521015: iinla: Evaluate predictor linearisation (level 3)
#> 2025-04-16 10:38:52.523025: Linearise with respect to component 'z' (level 4)
#> 2025-04-16 10:38:52.52636: Linearise with respect to component 'Intercept' (level 4)
#> 2025-04-16 10:38:52.529465: iinla: Construct inla stack (level 3)
#> 2025-04-16 10:38:52.541749: iinla: Model initialisation completed (level 3)
#> 2025-04-16 10:38:52.54295: iinla: Iteration 1 [max:10] (level 1)
#> 2025-04-16 10:38:52.939187: iinla: Step rescaling: 61.8%, Contract (norm0 = 2849, norm1 = 2611, norm01 = 510.5) (level 3)
#> 2025-04-16 10:38:52.941236: iinla: Step rescaling: 38.2%, Contract (norm0 = 580.8, norm1 = 429.5, norm01 = 510.5) (level 3)
#> 2025-04-16 10:38:52.943795: iinla: Step rescaling: 27.53%, Approx Optimisation (norm0 = 271.5, norm1 = 330.5, norm01 = 510.5) (level 3)
#> 2025-04-16 10:38:52.945036: iinla: |lin1-lin0| = 510.5
#> <eta-lin1,delta>/|delta| = -290.1
#> |eta-lin0 - delta <delta,eta-lin0>/<delta,delta>| = 158.5 (level 4)
#> 2025-04-16 10:38:52.946549: iinla: Step rescaling: 27.5% (norm0 = 271.5, norm1 = 330.5, norm01 = 510.5) (level 2)
#> 2025-04-16 10:38:52.948248: iinla: Evaluate component linearisations (level 3)
#> 2025-04-16 10:38:52.949389: Linearise components for each observation model (level 3)
#> 2025-04-16 10:38:52.950596: Linearise components (level 3)
#> 2025-04-16 10:38:52.951754: Linearise component 'z' (level 4)
#> 2025-04-16 10:38:52.960736: Linearise component 'Intercept' (level 4)
#> 2025-04-16 10:38:52.969585: iinla: Evaluate predictor linearisation (level 3)
#> 2025-04-16 10:38:52.971527: Linearise with respect to component 'z' (level 4)
#> 2025-04-16 10:38:52.974821: Linearise with respect to component 'Intercept' (level 4)
#> 2025-04-16 10:38:52.987652: iinla: Iteration 2 [max:10] (level 1)
#> 2025-04-16 10:38:53.3971: iinla: Step rescaling: 162%, Expand (norm0 = 535.2, norm1 = 207.3, norm01 = 330.6) (level 3)
#> 2025-04-16 10:38:53.399162: iinla: Step rescaling: 100%, Overstep (norm0 = 330.5, norm1 = 15.16, norm01 = 330.6) (level 3)
#> 2025-04-16 10:38:53.401712: iinla: Step rescaling: 99.73%, Approx Optimisation (norm0 = 329.6, norm1 = 15.13, norm01 = 330.6) (level 3)
#> 2025-04-16 10:38:53.402946: iinla: |lin1-lin0| = 330.6
#> <eta-lin1,delta>/|delta| = -1.388
#> |eta-lin0 - delta <delta,eta-lin0>/<delta,delta>| = 15.07 (level 4)
#> 2025-04-16 10:38:53.404107: iinla: Step rescaling: 99.7% (norm0 = 329.6, norm1 = 15.13, norm01 = 330.6) (level 2)
#> 2025-04-16 10:38:53.405721: iinla: Evaluate component linearisations (level 3)
#> 2025-04-16 10:38:53.406968: Linearise components for each observation model (level 3)
#> 2025-04-16 10:38:53.408181: Linearise components (level 3)
#> 2025-04-16 10:38:53.40932: Linearise component 'z' (level 4)
#> 2025-04-16 10:38:53.418111: Linearise component 'Intercept' (level 4)
#> 2025-04-16 10:38:53.426776: iinla: Evaluate predictor linearisation (level 3)
#> 2025-04-16 10:38:53.428677: Linearise with respect to component 'z' (level 4)
#> 2025-04-16 10:38:53.431978: Linearise with respect to component 'Intercept' (level 4)
#> 2025-04-16 10:38:53.44434: iinla: Max deviation from previous: 68000% of SD, and line search is active
#> [stop if: <10% and line search inactive] (level 1)
#> 2025-04-16 10:38:53.446118: iinla: Iteration 3 [max:10] (level 1)
#> 2025-04-16 10:38:53.85128: iinla: Step rescaling: 162%, Expand (norm0 = 23.85, norm1 = 8.728, norm01 = 15.13) (level 3)
#> 2025-04-16 10:38:53.85326: iinla: Step rescaling: 100%, Overstep (norm0 = 14.89, norm1 = 0.2394, norm01 = 15.13) (level 3)
#> 2025-04-16 10:38:53.855798: iinla: Step rescaling: 101.6%, Approx Optimisation (norm0 = 15.13, norm1 = 0.01452, norm01 = 15.13) (level 3)
#> 2025-04-16 10:38:53.857031: iinla: |lin1-lin0| = 15.13
#> <eta-lin1,delta>/|delta| = -1.014e-05
#> |eta-lin0 - delta <delta,eta-lin0>/<delta,delta>| = 0.01452 (level 4)
#> 2025-04-16 10:38:53.858206: iinla: Step rescaling: 102% (norm0 = 15.13, norm1 = 0.01452, norm01 = 15.13) (level 2)
#> 2025-04-16 10:38:53.859854: iinla: Evaluate component linearisations (level 3)
#> 2025-04-16 10:38:53.861001: Linearise components for each observation model (level 3)
#> 2025-04-16 10:38:53.862189: Linearise components (level 3)
#> 2025-04-16 10:38:53.863343: Linearise component 'z' (level 4)
#> 2025-04-16 10:38:53.872234: Linearise component 'Intercept' (level 4)
#> 2025-04-16 10:38:53.880994: iinla: Evaluate predictor linearisation (level 3)
#> 2025-04-16 10:38:53.88299: Linearise with respect to component 'z' (level 4)
#> 2025-04-16 10:38:53.886265: Linearise with respect to component 'Intercept' (level 4)
#> 2025-04-16 10:38:53.89852: iinla: Max deviation from previous: 701% of SD, and line search is active
#> [stop if: <10% and line search inactive] (level 1)
#> 2025-04-16 10:38:53.900317: iinla: Iteration 4 [max:10] (level 1)
#> 2025-04-16 10:38:54.306432: iinla: Step rescaling: 162%, Expand (norm0 = 0.02349, norm1 = 0.008971, norm01 = 0.01452) (level 3)
#> 2025-04-16 10:38:54.30849: iinla: Step rescaling: 100%, Overstep (norm0 = 0.01452, norm1 = 6.369e-08, norm01 = 0.01452) (level 3)
#> 2025-04-16 10:38:54.311071: iinla: Step rescaling: 100%, Approx Optimisation (norm0 = 0.01452, norm1 = 6.357e-08, norm01 = 0.01452) (level 3)
#> 2025-04-16 10:38:54.312293: iinla: |lin1-lin0| = 0.01452
#> <eta-lin1,delta>/|delta| = 8.003e-11
#> |eta-lin0 - delta <delta,eta-lin0>/<delta,delta>| = 6.357e-08 (level 4)
#> 2025-04-16 10:38:54.313965: iinla: Evaluate component linearisations (level 3)
#> 2025-04-16 10:38:54.315106: Linearise components for each observation model (level 3)
#> 2025-04-16 10:38:54.316301: Linearise components (level 3)
#> 2025-04-16 10:38:54.317432: Linearise component 'z' (level 4)
#> 2025-04-16 10:38:54.326344: Linearise component 'Intercept' (level 4)
#> 2025-04-16 10:38:54.334907: iinla: Evaluate predictor linearisation (level 3)
#> 2025-04-16 10:38:54.336829: Linearise with respect to component 'z' (level 4)
#> 2025-04-16 10:38:54.340162: Linearise with respect to component 'Intercept' (level 4)
#> 2025-04-16 10:38:54.352611: iinla: Max deviation from previous: 11.1% of SD, and line search is inactive
#> [stop if: <10% and line search inactive] (level 1)
#> 2025-04-16 10:38:54.354369: iinla: Iteration 5 [max:10] (level 1)
#> 2025-04-16 10:38:54.760314: iinla: Step rescaling: 162%, Expand (norm0 = 2.528e-07, norm1 = 9.654e-08, norm01 = 1.562e-07) (level 3)
#> 2025-04-16 10:38:54.762364: iinla: Step rescaling: 100%, Overstep (norm0 = 1.562e-07, norm1 = 4.855e-13, norm01 = 1.562e-07) (level 3)
#> 2025-04-16 10:38:54.764953: iinla: Step rescaling: 100%, Approx Optimisation (norm0 = 1.562e-07, norm1 = 4.442e-13, norm01 = 1.562e-07) (level 3)
#> 2025-04-16 10:38:54.76618: iinla: |lin1-lin0| = 1.562e-07
#> <eta-lin1,delta>/|delta| = -4.26e-15
#> |eta-lin0 - delta <delta,eta-lin0>/<delta,delta>| = 4.442e-13 (level 4)
#> 2025-04-16 10:38:54.767817: iinla: Evaluate component linearisations (level 3)
#> 2025-04-16 10:38:54.768972: Linearise components for each observation model (level 3)
#> 2025-04-16 10:38:54.770162: Linearise components (level 3)
#> 2025-04-16 10:38:54.771305: Linearise component 'z' (level 4)
#> 2025-04-16 10:38:54.780147: Linearise component 'Intercept' (level 4)
#> 2025-04-16 10:38:54.789389: iinla: Evaluate predictor linearisation (level 3)
#> 2025-04-16 10:38:54.791341: Linearise with respect to component 'z' (level 4)
#> 2025-04-16 10:38:54.794606: Linearise with respect to component 'Intercept' (level 4)
#> 2025-04-16 10:38:54.80689: iinla: Max deviation from previous: 0.111% of SD, and line search is inactive
#> [stop if: <10% and line search inactive] (level 1)
#> 2025-04-16 10:38:54.808088: iinla: Convergence criterion met.
#> Running final INLA integration step with known theta mode. (level 1)
#> 2025-04-16 10:38:54.809748: iinla: Iteration 6 [max:10] (level 1)
#> 2025-04-16 10:38:58.604499: bru: Preprocessing (level 1)
#> 2025-04-16 10:38:58.609716: Evaluate component inputs for each observation model (level 3)
#> 2025-04-16 10:38:58.610999: input_eval.component_list (level 4)
#> 2025-04-16 10:38:58.612194: input_eval.component(x) (level 4)
#> 2025-04-16 10:38:58.613394: input_eval.bru_input(x) (level 5)
#> 2025-04-16 10:38:58.621123: input_eval.bru_input(x.group) (level 5)
#> 2025-04-16 10:38:58.626938: input_eval.bru_input(x.repl) (level 5)
#> 2025-04-16 10:38:58.632083: input_eval.component_list (level 4)
#> 2025-04-16 10:38:58.633281: input_eval.component(x) (level 4)
#> 2025-04-16 10:38:58.634478: input_eval.bru_input(x) (level 5)
#> 2025-04-16 10:38:58.639622: input_eval.bru_input(x.group) (level 5)
#> 2025-04-16 10:38:58.644746: input_eval.bru_input(x.repl) (level 5)
#> 2025-04-16 10:38:58.671632: iinla: Start (level 3)
#> 2025-04-16 10:38:58.672815: iinla: Evaluate component linearisations (level 3)
#> 2025-04-16 10:38:58.674096: Linearise components for each observation model (level 3)
#> 2025-04-16 10:38:58.675332: Linearise components (level 3)
#> 2025-04-16 10:38:58.6765: Linearise component 'x' (level 4)
#> 2025-04-16 10:38:58.687773: Linearise components (level 3)
#> 2025-04-16 10:38:58.689018: Linearise component 'x' (level 4)
#> 2025-04-16 10:38:58.698428: iinla: Evaluate component simplifications (level 3)
#> 2025-04-16 10:38:58.699651: Simplify model components (level 3)
#> 2025-04-16 10:38:58.700935: Simplify component 'x' (level 4)
#> 2025-04-16 10:38:58.715503: Simplify component 'x' (level 4)
#> 2025-04-16 10:38:58.724684: iinla: Evaluate predictor linearisation (level 3)
#> 2025-04-16 10:38:58.731125: iinla: Construct inla stack (level 3)
#> 2025-04-16 10:38:58.747064: iinla: Model initialisation completed (level 3)
#> 2025-04-16 10:38:58.748424: iinla: Iteration 1 [max:1] (level 1)